PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2171s0014.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 313aa    MW: 33561.2 Da    PI: 5.9916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2171s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.8e-15217253135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Cagra.2171s0014.1.p 217 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 253
                          ******999************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.62481116IPR010399Tify domain
SMARTSM009792.8E-1481116IPR010399Tify domain
PfamPF062002.0E-1283115IPR010399Tify domain
PROSITE profilePS5101711.985149191IPR010402CCT domain
PfamPF062033.1E-14149191IPR010402CCT domain
SMARTSM004011.4E-17211264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.923211267IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13212268No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.00E-16216262No hitNo description
PfamPF003205.4E-13217253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFGRHSQPVI IPNNQIGTGS AASAGEDHVS ASVTSGHIPY DDMDEIPHPD SIYGTGSDLI  60
PDGSQLVAHR SEGSELLVSR PPEGANQLTI SFRGQVYVFD AVGPDKVDAV LSLLGGSTEL  120
ASGQQVMELA QQNHMPAVEY QSRCSLPQRA QSLDRFRKKR NARCFEKKVR YGVRQEVALR  180
MARNKGQFTS SKMSDGAYNS GTDQDSAQDD GHPEISCTHC GISSKCTPMM RRGPSGPRTL  240
CNACGLFWAN RGTLRDLSKK TEENQSPLIK MGEGGNVADA DNSNSEPATA EEDTSLVALA  300
NGENSIMLGN HH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353100.0AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285047.10.0hypothetical protein CARUB_v10006355mg
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLR0H0400.0R0H040_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__1832__AT4G24470.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain